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Structural, Functional Insights of Alsin Protein Using Homology Modeling and Docking Studies

Author: 
Ruchi Yadav
Subject Area: 
Life Sciences
Abstract: 

Amyotrophic lateral sclerosis (ALS), also known as “Lou Gehrig’s disease”. It is a neurodegenerative disease associated with degeneration of motor neurons in the cerebral cortex, brain stem, and spinal cord characterized by distal muscle weakness, atrophy, normal sensation, pyramidal signs and progressive muscular paralysis reflecting. ALS2 is a juvenile autosomal recessive disorder, slowly progressive, that maps to chromosome 2q33 and is associated with mutations in the alsin gene, a putative GTPase regulator. In this paper we have done homology modeling of alsin2 protein using multiple templates (3KCI_A, 4LIM_A, 402W_A, 4D9S_A, and 4DNV_A) designed using the Prime program in Schrödinger software. Structural and function analysis is done by using Prosite and ExPASy server that gives insight into conserved domains and motifs that can be used for protein classification. Further modeled structure is used to identify effective binding sites on the basis of structural and physical properties using sitemap program in Schrödinger software. Docking of Resveratrol with alsin protein evaluates the binding site and potential role of antioxidant in neurological disease. This paper summarizes the structural, functional, binding site, docking on alsin protein that gives insight into functional role of alsin protein in neurological disease this study can be used in drug discovery process.

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