Introduction: Non-communicable diseases (NCDs), including thyroid disease, are prevalent in Malaysia. A community health project was undertaken to improve community awareness of the risks of NCDs, and the benefits of screening for disease prevention and early detection. Methods: Community health screening was conducted during the 2016 KembaraMahkota community event in Johor, Malaysia. Blood samples were taken from willing participants who attending the event. Samples were tested for a range of biomarkers, including thyroid stimulating hormone (TSH) and anti-thyroid peroxidase antibodies (anti-TPO). Individuals identified as high risk were referred for specialist follow-up. Results: A total of 2744 individuals participated in biomarker screening. Based on TSH levels, hyperthyroidism and hypothyroidism were present in 1.5% and 0.95% of the population, respectively, and 11% of participants were positive for anti-TPO, indicating a risk of autoimmune thyroid disease. Conclusion: Community health projects such as ours are required to raise awareness of the risks of common preventable diseases, and to encourage individuals to participate in health checks and disease screening programmes.